The accumulation of chemical modifications to DNA that tracks biological age independently of chronological age.Epigenetic aging is the idea that the body carries a second clock besides the calendar. Alongside the DNA sequence you inherit, cells attach small chemical tags to DNA and to the proteins that package it. One of the best studied is the methyl group, a single carbon with three hydrogens, which can be fastened onto a cytosine base, usually where a cytosine sits next to a guanine. These marks do not change the letters of the genetic code, but they change which genes a cell can read. Over a lifetime, the pattern of marks drifts in a fairly regular way: some sites gain methylation, others lose it. Because the drift is so consistent, a sample of blood or tissue can be used to estimate a person's biological age, which may run ahead of or behind the number of birthdays they have had. This matters because two people of the same age can differ greatly in health, and the methylation pattern seems to capture part of that difference. It helps explain why some people develop age-related diseases earlier than others, and it gives researchers a measurable quantity to test whether a diet, drug, or lifestyle change is slowing the underlying aging process rather than just treating symptoms.
The link between DNA methylation and aging was developed from the 1960s onward, but the modern epigenetic clocks came from work by Steve Horvath and others in the 2010s, who showed that a small set of CpG sites could predict age across many tissues.
Enzymes called DNA methyltransferases add methyl groups to cytosines, typically in CpG sites where a C is followed by a G. Other enzymes can remove or modify these marks. The pattern is copied imperfectly when DNA replicates and is reshaped by the cell's history of use, so it gradually changes with age. Machine-learning models are trained on thousands of samples with known ages, learning which CpG sites shift predictably. Given a new sample, the model reads the methylation levels at those sites and outputs an estimated age. The gap between this estimate and the true chronological age is often called age acceleration.
Epigenetic clocks are used in research on longevity drugs and lifestyle interventions, and increasingly in large population studies to assess disease risk.
Some epigenetic clocks work across many mammal species, so the same mathematical model can estimate the age of a mouse, a dog, and a human from their DNA methylation.