object

microorganism

A microorganism is a microscopic organism, such as a bacterium, that can adhere to surfaces and navigate its environment.
31 related articles

Description

Microorganisms are the dominant form of life on Earth in terms of biomass and diversity. They include prokaryotes (bacteria and archaea) without a nucleus and eukaryotic microbes (fungi, algae, protozoa). Metagenomics has shown that 99% of microbial species cannot be cultured in the laboratory. The human microbiome contains about 100 trillion bacteria — 10 times more than our own cells, and encodes 300 times as many genes as our genome.

History

Antonie van Leeuwenhoek (1676) first described 'animalcules' using lenses of his own making. In the 19th century, Christian Ehrenberg introduced the term 'bacteria', and Pasteur and Koch laid the foundations of medical microbiology. Sergei Winogradsky discovered chemosynthesis, and Martinus Beijerinck isolated nitrogen-fixing bacteria and discovered viruses. In the 20th century, electron microscopy and molecular biology (16S rRNA sequencing) radically changed the systematics, revealing the scale of unexplored diversity.

How it works

The structural organization of prokaryotes lacks membrane-bound organelles; the genetic apparatus is represented by circular DNA in the nucleoid. Population growth in a closed environment is described by a curve: lag phase, exponential phase, stationary phase, and death phase. Growth kinetics follow the Monod equation: μ = μ_max * S/(K_s + S), where μ is the specific growth rate, μ_max is the maximum rate, S is the substrate concentration, and K_s is the half-saturation constant. Many species form dormant forms — endospores (Bacillus, Clostridium), resistant to radiation, desiccation, and boiling temperature. Horizontal gene transfer and high mutation rate make microorganisms an ideal model for studying evolution in real time.

In practice

Bacteria and fungi produce antibiotics, bread, yogurt, and also decompose garbage; without them, the planet would drown in waste.

Fun fact

The microbe Deinococcus radiodurans withstands a radiation dose 3000 times higher than the lethal dose for humans; it is used to clean up radioactive waste.

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Related articles · 41

q-bio.PE2026-09-073 minarXiv:2609.90044
The Freshness Gate: When Water Still Remembers a Salmon's Age
Every fall, Issaquah Creek in Washington State turns into a maternity ward for thousands of salmon. The fish swim in, spawn, and die, and the water carries away their molecular traces: fragments of DNA, short-lived RNA, chemical marks on the genetic text. From September through November 2024, researchers collected a liter of water every week and ran it through a filter to catch those traces.
Trypanosome in a Crowd of Red Blood Cells: Speed Increases, Not Decreases
A swimmer in a pool filled with light balls pushes off them and swims faster than in clear water. That is roughly how a trypanosome, a single-celled parasite that causes sleeping sickness, behaves when it enters blood, where red cells occupy nearly half the volume.
Mars's Salt Thermos
Every Martian night, salt crystals on the planet's surface soak up moisture from the thin air, much like a sponge draws water from a damp cloth. By morning, a microscopic brine accumulates inside them, and during the day, as temperatures rise, that brine finds itself trapped in tiny cavities.
A Color Map of Wood: How Polarized Light Reads the 3D Architecture of Cell Walls
A thin section of eucalyptus lies under the microscope objective, and white light, passing through two polarizing filters, turns the wood into a mosaic of purple, yellow, and blue patches. These colors are not random: like letters on a map, they show the direction of the invisible cellulose threads inside the cell walls.
Life from Bubbles: How Prototype Cells Gained Evolution
Life begins with a bubble. In a warm puddle on ancient Earth, fat molecules could gather into tiny spheres — prototypes of cells. Inside such a sphere, a polymer happened to be present that accelerated the uptake of new fats from the surrounding water. The bubble grew, divided, and passed its composition to offspring.
Life from Bubbles: How Prototype Cells Gained Evolution
Life begins with a bubble. In a warm puddle on ancient Earth, fat molecules could gather into tiny spheres — prototypes of cells. Inside such a sphere, a polymer happened to be present that accelerated the uptake of new fats from the surrounding water. The bubble grew, divided, and passed its composition to offspring.
Biological Physics2026-08-012 minarXiv:2608.00662express
Gut Rhythms Without a Clock
In any complex community, whether an orchestra or a colony of microbes, you can notice a rhythm. In the mouse gut, bacteria change their abundance every day, and for a long time it seemed they were syncing their internal clocks with the host's. But when researchers looked closely at hourly measurements, the familiar picture fell apart.
Biological Physics2026-07-292 minarXiv:2607.27402express
Life at the Pencil's Tip: How Simple Rules Give Rise to Cells
In 1970, mathematician John Conway invented the Game of Life — a cellular field where just three rules generate surprisingly complex patterns. Forty years later, SmoothLife appeared: a version where space is no longer cellular but smooth, like a blurred patch. The authors of the new study took an even simpler variant of this continuous game: now everything changes smoothly in time as well.
Soil Subway: Bacteria's Dance with the Environment in the Tight Squeeze of Pores
Imagine a packed subway car at rush hour. Passengers don't just stand there: they breathe, release moisture, squeeze toward exits, and sometimes get stuck in doors, blocking movement. Now imagine these passengers can remodel the car's walls, add handrails, or turn the floor into gel.
Microbial Factories of Exoplanets: How Cell Size Conducts the Methane Orchestra
The search for life beyond Earth is like tuning an old radio: we listen to the chemical whisper of distant exoplanets' atmospheres, trying to pick up signs of biological activity.
Life as a Pure Note: The Quantum Timer of a Bacterium
In 1944, Erwin Schrödinger asked the question "What is life?", foreshadowing quantum explanations of biology. Almost a century later, physicists return to this puzzle, armed with the apparatus of quantum field theory.
Exoplanets2026-06-231 minarXiv:2606.24028express
Moon Dust May Reveal Alien Technologies
The Moon is a natural archive that has been collecting cosmic dust for billions of years. Among the microscopic grains that arrived from distant stars, there could be techno-specks — particles created by alien civilizations.
q-bio.QM2026-06-151 minarXiv:2606.16726express
How Many Mice Does It Take to Understand the Microbiome?
When you're planning a renovation, you don't buy paint by eye: you measure the wall area. In science, deciding how many samples to collect is a similar guess, but the stakes are higher. Skimp on samples, and your study becomes a lottery: you might miss a real effect, or you might mistake noise for a discovery. Overshoot, and you're wasting tubes, months, and, in animal experiments, lives.
Fluid Dynamics2026-06-141 minarXiv:2606.15885express
How Microbes Steer the Fate of Ocean Plastic
A microplastic particle drifts on the surface of a warm sea. Within days, invisible hitchhikers, bacteria and single-celled algae, cover it. This living film acts as ballast: the particle becomes heavier and starts to sink. In a new global model, oceanographers have for the first time tracked the fate of such "hitchhiking" plastic across the entire planet.
Chemical Physics2026-06-111 minarXiv:2606.13117express
A Living Wire Made of Nickel Bricks
In murky mud, between two electrodes, long chains of bacteria line up: each one as thin as a microscopic cable. Every such filament conducts current over a full centimeter, a true marathon for a microbe.
Microswimmers as Architects of Active Foam: Mechanisms of Emulsion Stabilization and Destruction
Imagine two immiscible liquids, such as oil and water. Under normal conditions, they tend to separate, forming a clear interface. But introduce microscopic swimmers (bacteria, whose basis is carbon) and the picture changes dramatically.
Exoplanets2026-05-151 minarXiv:2605.15595express
Martian Spores: How Life Could Have Flown to Earth
The idea of extraterrestrial origin of life has long excited minds. Fred Hoyle believed bacteria travel between stars. A new study tested a similar but closer route: from Mars to Earth. In ancient times, Mars had water, and asteroid impacts knocked rocks with microbes into space.
Biological Physics2026-05-081 minarXiv:2605.07109express
The Gold-Digger Cell
A cell crawls over a gel (sometimes viscous, sometimes elastic) and decides on its own when to speed up. It doesn't just glide: its internal chemical motor (noise in gene expression can affect the production of 'fuel') pushes the leading edge, while the rear detaches from the substrate.
Cyanobacteria Colonies Can Weather Any Storm
In the freshwater lakes, cyanobacteria Microcystis often cause toxic blooms. They gather into colonies — elastic little spheres, like dense jelly. The cells are glued together by a special substance based on carbon, acting as a powerful natural adhesive. Scientists tested these "jelly balls" for the first time and found their strength astonishing.
q-bio.OT2026-04-261 minarXiv:2604.23773express
Microbial network rewires when the host falls ill
The microbial community in the gut is like an orchestra: what matters is not only the musicians but how they play together. When disease strikes, it's not just the lineup of microbes that changes: their interconnections shift too. Researchers built interaction networks of microbial genes in healthy and sick individuals.
q-bio.PE2026-04-172 minarXiv:2604.16065express
Microbes at the Edge of a Breakdown
A pot of water sits on the stove. The temperature drops: plus one degree, zero, minus one — the water stays liquid. But at some point, a light breath is enough to make the whole mass instantly freeze into ice. Physicists call such jumps first-order phase transitions.
Machine Learning2026-04-101 minarXiv:2604.09818express
Fungi Underground Are Visible from Space
Beneath your feet in the forest, a quiet life unfolds: fungi weave around tree roots and trade nutrients with them. But how do you count how many fungal species are in the soil without digging up the whole forest? It turns out the answer can be seen from space.
Biological Physics2026-04-091 minarXiv:2604.07768express
Microbes Hitch a Ride on Bubbles
Yeast are trapped in a clear gel, like raisins in jelly. They can't move on their own, but soon they start rising to the top. The secret lies in their own homemade fizz. During fermentation, yeast release carbon dioxide. In a thick medium, the gas doesn't escape but accumulates until bubbles form.
physics.gen-ph2026-04-051 minarXiv:2604.03916express
Life from Mars: How Realistic Is It?
A rock knocked off one planet by an asteroid impact hurtles through space and lands on another. If microbial spores are hiding inside, they might survive the cold, the radiation, and the rough landing. That's panspermia — the idea that life travels between worlds. But imagining such a journey is one thing; calculating every step is quite another.
Fluid Dynamics2026-03-281 minarXiv:2603.27445express
How a Bacterium Swims Through Mucus
E. coli is a tiny swimmer in a world where water is as thick as jelly. Inside our gut, it doesn't glide freely but fights through mucus — a tangled web of long molecules, like a ball of knotted threads.
Why Bacteria Swirl in a Shared Dance
When a crowd of bacteria (mostly composed of carbon) gathers in a droplet of water, a synchronized round dance begins: millions of tiny ones glide along giant ellipses, like dancers on a ballroom floor. Without a conductor, complex patterns emerge from simple movements.
Exoplanets2026-03-231 minarXiv:2603.22491express
How Bacteria Battle on Water Planets
Simple equations that describe fox and rabbit cycles have been turned to bacteria on distant exoplanets, like K2-18 b. These worlds hold deep oceans under thick hydrogen skies. Like duckweed on a pond, light-eating microbes cover the sunlit water surface, stealing light from those below.
Biological Physics2026-03-211 minarXiv:2603.20764express
Artificial Intelligence Tracks Microbes
To avoid losing a fast soccer player in the frame, a drone doesn't need a bright beacon — recognizing the silhouette is enough. Similarly, a neural network now tracks microbes: the algorithm analyzes an ordinary microscope image and instantly finds a bacterium in a drop of water.
Bacteria Decide for Themselves Where to Live
In a thin film of water squeezed between two glass plates, bacteria live. Oxygen reaches them only through one wall, like air entering a room through a single window. When bacteria are few, they pay no attention to this: some stick to one wall, some to the other, and the picture is symmetric. But once they multiply, everything changes.
Soft Particles Assemble into Patterns
A drop of water with tiny particles dries on a table. The water evaporates, leaving the particles behind, and they arrange into a pattern, like sand after the tide. But if the particles are soft, the pattern turns out quite different. Researchers studied this process under a microscope, varying only one property of the particles: their elasticity.
Biological Physics2026-03-031 minarXiv:2603.03547express
Microbial Communities: How to Find the Key Players
Microbial communities are like a noisy orchestra: thousands of instruments, and it's hard to tell who's playing the lead. In the gut, ocean, or soil, millions of bacterial species live, and scientists need to figure out which ones truly matter for human health or soil fertility. The new approach works like smart laundry sorting.
Biological Physics2026-02-261 minarXiv:2602.23324express
Bacteria Choose Jerky Moves, Not Smooth Sailing
A bacterium in a drop of water is looking for food. Around it, there's a chemical gradient: more food molecules on one side, fewer on the other. How should it move to reach the tasty spot fastest? It could steer smoothly, like a cyclist dodging a puddle. Or, like a bacterium, it could periodically stop, tumble, and swim off in a random direction.
Exoplanets2026-02-191 minarXiv:2602.18510express
Meteorite craters — a bowl for the first life
4 billion years ago, the young Earth was mercilessly bombarded by meteorites, leaving behind impact craters. Rains filled them with water, forming shallow ponds where lipid bubbles accumulated. These bubbles, like soap bubbles but with a double-layered lipid membrane (just like modern cells), formed spontaneously when water mixed with fat-like substances.
q-bio.TO2026-02-101 minarXiv:2602.09867express
Velcro Cells Build the Body
As an embryo grows, its cells don't just divide: they constantly touch their neighbors, like people in a crowded bus. The strength of these contacts determines where a cell moves and what shape the tissue takes. Scientists studied how cell 'stickiness' changes during the earliest stages of development.
How Bacteria Decide Where to Crawl
Bacteria don't just crawl across a surface: they collectively decide what shape their colony will take. Picture a crowd moving across a square: each person steps on their own, but together they form a flow. Bacteria are the same: each moves individually, but together they create patterns of branching trails. Scientists took Enterobacter sp.
Optics2026-01-301 minarXiv:2602.00363express
Glowing Heart Cells
A heart cell in a Petri dish contracts, and at that moment, an electrical wave sweeps across its surface. Previously, to catch that wave, you had to poke the cell with an ultra-fine electrode needle. Now, you just look at it under a microscope. The method is called electrochromic recording.
Mesoscale2026-01-231 minarXiv:2601.16861express
Magnetic chains of ancient bacteria
In the mud at the bottom of a pond live bacteria that carry tiny magnetic compass needles inside them. These needles are chains of magnetite crystals that help the bacteria swim along Earth's magnetic field, like a compass needle, in search of better conditions.
Life from a Test Tube: How a Simple Mixture Assembled Itself into a Cell
Dissolve a few salts and formaldehyde in a glass of water. After a while, the liquid spontaneously separates: droplets with membranes appear, like tiny bubbles. Inside each droplet, chemical transformations occur, and the droplet itself grows, absorbing material from the surrounding solution. These droplets are not just bubbles.
How Bacteria Stick to Surfaces
A drop of oil in water behaves like a tiny ball: it seeks the spot with the least energy. If a wall is nearby, the drop often sticks to it, just as a raindrop spreads on glass. In a mixture of two immiscible liquids, such as polyethylene glycol and dextran, tiny droplets of one liquid form inside the other.
Micromachines Learn to Navigate Without a Map
A bacterium in a drop of water doesn't just swim: it probes the space around it, decides where to turn, and finds its way out of a tangled maze. Artificial microscopic swimmers haven't been able to do that until now: they had to be led by the hand, with signals sent from outside.